PlantTFDB
Plant Transcription Factor Database
v3.0
Center for Bioinformatics, Peking University, China Previous versions:v1.0 v2.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g06550.1
Common NameP0041E11.9, Os01g0158900
Organism
Taxonomic ID
Taxonomic Lineage
Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Liliopsida; commelinids; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa
Family NF-X1
Protein Properties Length: 909aa    MW: 99555.6 Da    PI: 8.4579
Description NF-X1-type zinc finger protein, putative, expressed
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g06550.1genomeTIGR6.1View CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06262279118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H+C   CH GpCppC
  LOC_Os01g06550.1 262 CGIHRCPVDCHDGPCPPC 279
                       ****************** PP

2zf-NF-X116.51.8e-05369388119
          zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                       CG+HkC + CH+G C + C+
  LOC_Os01g06550.1 369 CGRHKCPERCHRGSCVEtCR 388
                       ***************99997 PP

3zf-NF-X116.51.9e-05422441120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H C + C+eG+C pCp+
  LOC_Os01g06550.1 422 CGRHACRRRCCEGDCAPCPE 441
                       ******************96 PP

4zf-NF-X122.32.9e-07449468120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+HkC ++CH+G C pCp+
  LOC_Os01g06550.1 449 CGNHKCLSPCHRGACAPCPL 468
                       ******************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PANTHERPTHR12360:SF1053901No hitNo description
PANTHERPTHR12360053901No hitNo description
SuperFamilySSF578508.8e-07104175No hitNo description
PROSITE patternPS013590109159IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.096109160IPR001841Zinc finger, RING-type
SMARTSM004380.02209227IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011262281IPR000967Zinc finger, NF-X1-type
SMARTSM004380.082315334IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035369389IPR000967Zinc finger, NF-X1-type
SMARTSM004380.087422441IPR000967Zinc finger, NF-X1-type
PfamPF014229.2e-05449468IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0038449468IPR000967Zinc finger, NF-X1-type
SMARTSM0043825512527IPR000967Zinc finger, NF-X1-type
SMARTSM004381.6e+02535580IPR000967Zinc finger, NF-X1-type
SMARTSM00438200617661IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1671689IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44734755IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006139Biological Processnucleobase-containing compound metabolic process
GO:0006950Biological Processresponse to stress
GO:0008150Biological Processbiological_process
GO:0008152Biological Processmetabolic process
GO:0009058Biological Processbiosynthetic process
GO:0009628Biological Processresponse to abiotic stimulus
GO:0009908Biological Processflower development
GO:0009987Biological Processcellular process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functionsequence-specific DNA binding transcription factor activity
GO:0005488Molecular Functionbinding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MPFSYAAAAS GSASSSRKPV PVAAAAARRP APSPAAAAAP APSPSNPSAV SDSDPSSYSS  60
SGEETDLTAS DPAAASVISS YLSVAGDGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSASCF ALLHLHCIQS WAHQSSSAAP SPTWGCPKCR FPYPKSQTPT SYLCFCSKTV  180
DPAPDPWILP HSCGDVCGRR LNADRDSGCE HNCLLLCHPG PCPPCPAIVP NAMCFCGSHR  240
ETRRCSHQRY SCSGKCNKRL GCGIHRCPVD CHDGPCPPCA VRGKHKCECG ETMEERLCSE  300
RVFQCKRECG GMLQCGKHSC ERGCHAGKCG GCPLQGRRTC PCGKKDYPSL DCDAEAATCG  360
STCEKVLGCG RHKCPERCHR GSCVETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR  420
NCGRHACRRR CCEGDCAPCP EVCDKRLRCG NHKCLSPCHR GACAPCPLMK TISCNCGQTF  480
FEVPCGTEKN QKPPKCSKKC NIARLCRHKL ECRPHKCHYG ACPPCKLICG EELSCGHRCK  540
LRCHGPIAPP NPEFTLKPIK RKKGKHIDST PGTPCPPCQE VVLVPCFGHH LGQERAILCS  600
KRRQFPCQNL CGNPLNCGNH YCTKACHVLQ IPLSQPEGDQ SAILSLASAS AFAEPCEECN  660
LPCQRVREPP CSHPCPLPCH LNDCPPCKAL VKRPCHCGAM VHAFECMYYN NLNATKQQKV  720
RSCGGPCHRK LPNCPHLCSE ICHPGQCPSV DQCMKKVNVR CACNNLKKEW ICQDVLKEYR  780
QSGRDPKQIP KNQYAVGLLA CGEDCVKKVK AADSELHLRK IQEIKTPAVE VENVPKRRKR  840
RNRGQESVES SKFQEIKAVA LKFLLVIFLC IIVVAGLYLL WKGVYRLSDW MNDMEEQRAR  900
QRHLKPGRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834840PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.124540.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329767830.0
GeneVestigatorOs.12454.1.S1_a_at1e-116
Expression AtlasLOC_Os01g06550-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g06550
Phenotype -- QTL ? help Back to Top
Source Description
Grameneroot number, leaf length, tiller number, days to heading, plant height, spikelet number, tiller angle, filled grain number, 1000-seed weight, male fertility restoration, grain number, chlorophyll content, H2O2 content, panicle number, panicle length, spikelet fertility, cooked kernel elongation, grain weight, root dry weight, biomass yield, specific leaf area, soluble protein content, leaf senescence, panicle weight
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Query Start Query End Hit Start Hit End Description
RefseqNP_001042080.10.019091909Os01g0158900
SwissprotQ9FFK80.07190246878NFXL2_ARATH NF-X1-type zinc finger protein NFXL2
TrEMBLQ5ZEL80.019091909Q5ZEL8_ORYSJ Os01g0158900 protein
SRINGLOC_Os01g06550.10.019091909
Ortholog Group ? help Back to Top
Ortholog Group IDTaxa NumberGene Number
OG768734350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors